pybaselines

pybaselines provides different techniques for fitting baselines to experimental data.

  • Polynomial methods (pybaselines.polynomial)

    • poly (Regular Polynomial)

    • modpoly (Modified Polynomial)

    • imodpoly (Improved Modified Polynomial)

    • penalized_poly (Penalized Polynomial)

    • loess (Locally Estimated Scatterplot Smoothing)

    • quant_reg (Quantile Regression)

    • goldindec (Goldindec Method)

  • Whittaker-smoothing-based methods (pybaselines.whittaker)

    • asls (Asymmetric Least Squares)

    • iasls (Improved Asymmetric Least Squares)

    • airpls (Adaptive Iteratively Reweighted Penalized Least Squares)

    • arpls (Asymmetrically Reweighted Penalized Least Squares)

    • drpls (Doubly Reweighted Penalized Least Squares)

    • iarpls (Improved Asymmetrically Reweighted Penalized Least Squares)

    • aspls (Adaptive Smoothness Penalized Least Squares)

    • psalsa (Peaked Signal's Asymmetric Least Squares Algorithm)

    • derpsalsa (Derivative Peak-Screening Asymmetric Least Squares Algorithm)

  • Morphological methods (pybaselines.morphological)

    • mpls (Morphological Penalized Least Squares)

    • mor (Morphological)

    • imor (Improved Morphological)

    • mormol (Morphological and Mollified Baseline)

    • amormol (Averaging Morphological and Mollified Baseline)

    • rolling_ball (Rolling Ball Baseline)

    • mwmv (Moving Window Minimum Value)

    • tophat (Top-hat Transformation)

    • mpspline (Morphology-Based Penalized Spline)

    • jbcd (Joint Baseline Correction and Denoising)

  • Spline methods (pybaselines.spline)

    • mixture_model (Mixture Model)

    • irsqr (Iterative Reweighted Spline Quantile Regression)

    • corner_cutting (Corner-Cutting Method)

    • pspline_asls (Penalized Spline Version of asls)

    • pspline_iasls (Penalized Spline Version of iasls)

    • pspline_airpls (Penalized Spline Version of airpls)

    • pspline_arpls (Penalized Spline Version of arpls)

    • pspline_drpls (Penalized Spline Version of drpls)

    • pspline_iarpls (Penalized Spline Version of iarpls)

    • pspline_aspls (Penalized Spline Version of aspls)

    • pspline_psalsa (Penalized Spline Version of psalsa)

    • pspline_derpsalsa (Penalized Spline Version of derpsalsa)

  • Smoothing-based methods (pybaselines.smooth)

    • noise_median (Noise Median method)

    • snip (Statistics-sensitive Non-linear Iterative Peak-clipping)

    • swima (Small-Window Moving Average)

    • ipsa (Iterative Polynomial Smoothing Algorithm)

    • ria (Range Independent Algorithm)

  • Baseline/Peak Classification methods (pybaselines.classification)

    • dietrich (Dietrich's Classification Method)

    • golotvin (Golotvin's Classification Method)

    • std_distribution (Standard Deviation Distribution)

    • fastchrom (FastChrom's Baseline Method)

    • cwt_br (Continuous Wavelet Transform Baseline Recognition)

    • fabc (Fully Automatic Baseline Correction)

  • Optimizers (pybaselines.optimizers)

    • collab_pls (Collaborative Penalized Least Squares)

    • optimize_extended_range

    • adaptive_minmax (Adaptive MinMax)

  • Miscellaneous methods (pybaselines.misc)

    • interp_pts (Interpolation between points)

    • beads (Baseline Estimation And Denoising with Sparsity)

@author: Donald Erb Created on March 5, 2021

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