Examples

This section shows various uses of pybaselines.

To run the examples, Matplotlib must be installed, which can be done by running:

pip install matplotlib

General Examples

Algorithm convergence

Algorithm convergence

Working with Masked or Missing Data

Working with Masked or Missing Data

Fitting noisy data

Fitting noisy data

Padding data

Padding data

Padding with 'extrapolate' mode

Padding with 'extrapolate' mode

Fitting Multiple Datasets

Fitting Multiple Datasets

Sorting Data

Sorting Data

Whittaker Baseline Examples

lam effects

lam effects

lam vs data size

lam vs data size

Whittaker solver timings

Whittaker solver timings

Morphological Baseline Examples

half_window effects

half_window effects

Spline Baseline Examples

lam vs number of knots

lam vs number of knots

P-spline versions of Whittaker functions

P-spline versions of Whittaker functions

Classification Baseline Examples

Classification masks

Classification masks

fastchrom threshold

fastchrom threshold

Miscellaneous Baseline Examples

Preprocessing for beads

Preprocessing for beads

Optimizer Baseline Examples

Customized Baseline Correction

Customized Baseline Correction

2D Baseline Examples

Using individual_axes for 1D Baseline Correction

Using individual_axes for 1D Baseline Correction

Eigendecomposition for 2D Whittaker Baselines

Eigendecomposition for 2D Whittaker Baselines